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Department: Any ÅAU / Department of Information Technologies UTU / Department of Information Technology UTU / Department of Mathematics and Statistics UTU / Turku School of Economics, Institute of Information Systems Sciences

Research Unit: Any Algorithmics and Computational Intelligence Group (ACI) Biomathematics Research Unit (BIOMATH) Communication Systems (ComSys) Computational Biomodeling Laboratory (Combio Lab) Data Mining and Knowledge Management Laboratory Distributed Systems Laboratory (DS Lab) Embedded Computer and Electronic Systems (ECES) Embedded Systems Laboratory (ESLAB) FUNDIM, Fundamentals of Computing and Discrete Mathematics Institute for Advanced Management Systems Research (IAMSR) Learning and Reasoning Lab Software Construction Laboratorium Software Development Laboratory (SwDev) Software Engineering Laboratory (SE Lab) Turku BioNLP Group Turku Optimization Group (TOpGroup) UTU Information Systems Science (ISS)

Publication type: Any Monographs Edited books Edited special issues of journals Edited proceedings Articles in journals Articles in proceedings Chapters in edited books Ph.D. thesis Lic. thesis Technical reports

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Articles in journals (13):

• Satu Jääskeläinen, Pentti Riikonen, Tapio Salakoski, Mauno Vihinen, Accuracy of Protein Hydropathy Predictions. Int. J. Data Mining and Bioinformatics, 4(6), 733-752, 2010.
• Virpi Ahola, Tero Aittokallio, Mauno Vihinen, Esa Uusipaikka, Model-Based Prediction of Sequence Alignment Quality. Bioinformatics 24(9), 2165–2171, 2008.
• Pentti Riikonen, Mauno Vihinen, National Research Contributions: A Case Study on Finnish Biomedical Research . Scientometrics 77(2), 207–222, 2008.
• Virpi Ahola, Tero Aittokallio, Mauno Vihinen, Esa Uusipaikka, A Statistical Score for Assessing the Quality of Multiple Sequence Alignments. BMC Bioinformatics 7, 484, 2006.
• Jouni Väliaho, Pentti Riikonen, Mauno Vihinen, Distribution of Immunodeficiency Fact Files with XML – from Web to WAP. BMC Medical Informatics and Decision Making v5, 2005.
• Virpi Ahola, Tero Aittokallio, Esa Uusipaikka, Mauno Vihinen, Statistical Methods for Identifying Conserved Residues in Multiple Sequence Alignment. Statistical Applications in Genetics and Molecular Biology 3(1), 1–28, 2004.
• Virpi Ahola, Tero Aittokallio, Esa Uusipaikka, Mauno Vihinen, Efficient Estimation of Emission Probabilities in Profile Hidden Markov Models. Bioinformatics 19(18), 2359–2368, 2003.
• Pentti Riikonen, Jorma Boberg, Tapio Salakoski, Mauno Vihinen, Mobile Access to Biological Databases on the Internet. IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING 49(12), 1477–1479, 2002.
• Jorma Boberg, Pentti Riikonen, Tapio Salakoski, Mauno Vihinen, BioWAP: Mobile Internet service for bioinformatics. Bioinformatics (9), 855–856, 2001.
• Kaj Stenberg, Pentti Riikonen, Mauno Vihinen, KinMutBase, a database of human disease-causing protein kinase mutations. Nucleic Acids Research 28(1), 369–371, 2000.
• Jouni Väliaho, Pentti Riikonen, Mauno Vihinen, Novel immunodeficiency data servers. Immunological Reviews 178, 177–185, 2000.
• Pentti Riikonen, Mauno Vihinen, MUTbase: maintenance and analysis of distributed mutation databases. Bioinformatics 15(10), 852–859, 1999.
• Kaj Stenberg, Pentti Riikonen, Mauno Vihinen, KinMutBase, a database of human disease-causing protein kinase mutations. Nucleic Acids Research 27(1), 362–364, 1999.

Articles in proceedings (2):

• Satu Jääskeläinen, Pentti Riikonen, Tapio Salakoski, Mauno Vihinen, Evaluation of Protein Hydropathy Scales. In: Ion Mandoiu Zoran Obradovic Jiali Xia Xiaohua Hu (Ed.), 2007 IEEE International Conference on Bioinformatics and Biomedicine BIBM 2007, 245-251, 2007.
• Pentti Riikonen, Tapio Salakoski, Mauno Vihinen, Bioinformatics in the 21st century: From textual databases to distributed object collections - New mutation and patient registries in the net. In: Mathematics and Molecular Biology VI: Understanding Structure, 1999.