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Department: Any ÅAU / Department of Information Technologies UTU / Department of Information Technology UTU / Department of Mathematics and Statistics UTU / Turku School of Economics, Institute of Information Systems Sciences

Research Unit: Any Algorithmics and Computational Intelligence Group (ACI) Biomathematics Research Unit (BIOMATH) Communication Systems (ComSys) Computational Biomodeling Laboratory (Combio Lab) Data Mining and Knowledge Management Laboratory Distributed Systems Laboratory (DS Lab) Embedded Computer and Electronic Systems (ECES) Embedded Systems Laboratory (ESLAB) FUNDIM, Fundamentals of Computing and Discrete Mathematics Institute for Advanced Management Systems Research (IAMSR) Learning and Reasoning Lab Software Construction Laboratorium Software Development Laboratory (SwDev) Software Engineering Laboratory (SE Lab) Turku BioNLP Group Turku Optimization Group (TOpGroup) UTU Information Systems Science (ISS)

Publication type: Any Monographs Edited books Edited special issues of journals Edited proceedings Articles in journals Articles in proceedings Chapters in edited books Ph.D. thesis Lic. thesis Technical reports

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Articles in journals (1):

• Suwisa Kaewphan, Sofie Van Landeghem, Tomoko Ohta, Yves Van de Peer, Filip Ginter, Sampo Pyysalo, Cell Line Name Recognition in Support of the Identification of Synthetic Lethality in Cancer from Text. Bioinformatics , 1–7, 2015.

Articles in proceedings (7):

• Suwisa Kaewphan, Kai Hakala, Filip Ginter, UTU: Disease Mention Recognition and Normalization with CRFs and Vector Space Representations. In: Preslav Nakov, Torsten Zesch (Eds.), Proceedings of the 8th International Workshop on Semantic Evaluation (SemEval 2014) ,, 807–811, Association for Computational Linguistics, 2014.
• Farrokh Mehryary, Suwisa Kaewphan, Kai Hakala, Filip Ginter, Eliminating Incorrect Events from Large‐Scale Event Networks by Trigger Word Clustering and Pruning. In: Olivier Bodenreider, Fabio Rinaldi, José Luis Oliveira (Eds.), Proceedings of the 6th International Symposium on Semantic Mining in Biomedicine (SMBM 2014), 75–79, University of Aveiro, 2014.
• Jari Björne, Suwisa Kaewphan, Tapio Salakoski, UTurku: Drug Named Entity Recognition and Drug-Drug Interaction Extraction Using SVM Classification and Domain Knowledge. In: Suresh Manandhar, Deniz Yuret (Eds.), Proceedings of the Seventh International Workshop on Semantic Evaluation (SemEval 2013), 2, 651–659, Association for Computational Linguistics (ACL), 2013.
• Kai Hakala, Farrokh Mehryary, Suwisa Kaewphan, Filip Ginter, Hypothesis Generation in Large-Scale Event Networks. In: Fabio Rinaldi, Kim Jin-Dong (Eds.), Proceedings of the 5th International Symposium on Language in Biology and Medicine (LBM 2013), 19–27, Database Center for Life Science, 2013.
• Sofie van Landeghem, Suwisa Kaewphan, Filip Ginter, Yves van de Peer, Evaluating Large-Scale Text Mining Applications Beyond the Traditional Numeric Performance Measures. In: Claire Nédellec, Robert Bossy, Jin-Dong Kim, Jung-jae Kim, Tomoko Ohta, Sampo Pyysalo, Pierre Zweigenbaum (Eds.), Proceedings of the 2013 Workshop on Biomedical Natural Language Processing (BioNLP'13), 63–71, Association for Computational Linguistics (ACL), 2013.
• Kai Hakala, Sofie van Landeghem, Suwisa Kaewphan, Tapio Salakoski, Yves van de Peer, Filip Ginter, CyEVEX: Literature-Scale Network Integration and Visualization Through Cytoscape. In: Sophia Ananiadou, Sampo Pyysalo, Dietrich Rebholz-Schuhmann, Fabio Rinaldi, Tapio Salakoski (Eds.), Proceedings of the 5th International Symposium on Semantic Mining in Biomedicine, 91–96, ACM Press, 2012.
• Suwisa Kaewphan, Sanna Kreula, Sofie Van Landeghem, Yves Van de Peer, Patrik R. Jones, Filip Ginter, Integrating Large-Scale Text Mining and Co-Expression Networks: Targeting NADP(H) Metabolism in E. coli with Event Extraction. In: Sophia Ananiadou, Kevin Cohen, Dina Demner-Fushman, Paul Thompson (Eds.), Third Workshop on Building and Evaluating Resources for Biomedical Text Mining, 8–15, European Language Resources Association (ELRA), 2012.