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Department: Any ÅAU / Department of Information Technologies UTU / Department of Information Technology UTU / Department of Mathematics and Statistics UTU / Turku School of Economics, Institute of Information Systems Sciences

Research Unit: Any Algorithmics and Computational Intelligence Group (ACI) Biomathematics Research Unit (BIOMATH) Communication Systems (ComSys) Computational Biomodeling Laboratory (Combio Lab) Data Mining and Knowledge Management Laboratory Distributed Systems Laboratory (DS Lab) Embedded Computer and Electronic Systems (ECES) Embedded Systems Laboratory (ESLAB) FUNDIM, Fundamentals of Computing and Discrete Mathematics Institute for Advanced Management Systems Research (IAMSR) Learning and Reasoning Lab Software Construction Laboratorium Software Development Laboratory (SwDev) Software Engineering Laboratory (SE Lab) Turku BioNLP Group Turku Optimization Group (TOpGroup) UTU Information Systems Science (ISS)

Publication type: Any Monographs Edited books Edited special issues of journals Edited proceedings Articles in journals Articles in proceedings Chapters in edited books Ph.D. thesis Lic. thesis Technical reports

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Articles in journals (17):

• Alexandru Amarioarei, Gefry Barad, Elena Czeizler, Eugen Czeizler, Ana-Maria Dobre, Corina Itcus, Andrei Paun, Mihaela Paun, Trandafir Romica, Iris Tusa, One Dimensional DNA Tiles Self Assembly Model Simulation. International Journal of Unconventional Computing 13(4-5), 399 – 415, 2018.
• Abdulmelik Mohammed, Elena Czeizler, Eugen Czeizler, Computational Modelling of the Kinetic Tile Assembly Model Using a Rule-Based Approach. Theoretical Computer Science 701, 203 – 215, 2017.
• Elena Czeizler, Eugen Czeizler, Bogdan Iancu, Ion Petre, Quantitative Model Refinement as a Solution to the Combinatorial Size Explosion of Biomodels. Electronic Notes in Theoretical Computer Science 284, 35–53, 2012.
• Elena Czeizler, Andrzej Mizera, Ion Petre, A Boolean Approach for Disentangling the Roles of Submodules to the Global Properties of a Biomodel. Fundamenta Informaticae 116(1-4), 51–63, 2012.
• Eugen Czeizler, Andrzej Mizera, Elena Czeizler, Ralph-Johan Back, John E. Eriksson, Ion Petre, Quantitative Analysis of the Self-Assembly Strategies of Intermediate Filaments from Tetrameric Vimentins. IEEE-ACM Transactions on Computational Biology and Bioinformatics 9(3), 885–898, 2012.
• Bogdan Iancu, Elena Czeizler, Eugen Czeizler, Ion Petre, Quantitative Refinement of Reaction Models. International Journal of Unconventional Computing 8(5-6), 529–550, 2012.
• Andrzej Mizera, Elena Czeizler, Ion Petre, Methods for Biochemical Decomposition and Quantitative Submodel Comparison. Israel Journal of Chemistry 51, 151–164, 2011.
• Elena Czeizler, Lila Kari, Shinnosuke Seki, On a Special Class of Primitive Words. Theoretical Computer Science 411(3), 617–630, 2010.
• Elena Czeizler, Eugen Czeizler, Lila Kari, Kai Salomaa, On the Descriptional Complexity of Watson-Crick Automata. Theoretical Computer Science 410(35), 3250–3260, 2009.
• Elena Czeizler, Wojciech Plandowski, On Systems of Word Equations Over Three Unknowns with at most Six Occurrences of One of the Unknowns. Theoretical Computer Science 410(30-32), 2889–2909, 2009.
• Elena Czeizler, Stepan Holub, Juhani Karhumäki, Markku Laine, Intricacies of Simple Word Equations: An Example. Int. J. of Foundations of Computer Science 18(6), 1167 - 1175, 2007.
• Elena Czeizler, Juhani Karhumäki, On Non-Periodic Solutions of Independent Systems of Word Equations Over Three Unknowns. International Journal of Foundations of Computer Science 18(4), 873–897, 2007.
• Elena Czeizler, Eugen Czeizler, A Short Survey on Watson-Crick Automata. Bulletin of the EATCS (88), 104-119, 2006.
• Elena Czeizler, Eugen Czeizler, On the Power of Parallel Communicating Watson-Crick Automata Systems. Theoretical Computer Science 358(1), 142–147, 2006.
• Elena Czeizler, Eugen Czeizler, Parallel Communicating Watson-Crick Automata Systems. Acta Cybernetica 17(4), 685–700, 2006.
• Elena Czeizler, The Non-Parametrizability of the Word Equation xyz=zvx: A Short Proof. Theoretical Computer Science 345(2-3), 296–303, 2005.
• Eugen Czeizler, Andrzej Mizera, Elena Czeizler, Ralph-Johan Back, John E. Eriksson, Ion Petre, Quantitative Analysis of the Self-Assembly Strategies of Intermediate Filaments from Tetrameric Vimentin. 9, 885–98, 2000.

Articles in proceedings (4):

• Elena Czeizler, Eugen Czeizler, Ralph-Johan Back, Ion Petre, Control Strategies for the Regulation of the Eukaryotic Heat Shock Response. In: Pierpaolo Gorrieri Roberto Degano (Ed.), Proceedings of Computational Mehods in Systems Biology, 111-125, Springer, 2009.
• Elena Czeizler, Eugen Czeizler, Lila Kari, Shinnosuke Seki, An Extension of Lyndon and Schutzenberger's Result to DNA-Like Strings. In: Proceedings of the 13th International Conference on Developments in Language Theory, 183-194, Springer, 2009.
• Elena Czeizler, Multiple Constraints on Three and Four Words. In: Proceedings of CANT 2006: EMS International School and Conference on Combinatorics, Automata and Number Theory, 2006.
• Elena Czeizler, Eugen Czeizler, Parallel Communicating Watson-Crick Automata Systems. In: Z. Fulop Z. Esik (Ed.), Proceedings of 11th International Conference, AFL 2005, 83-96, 2005.

Chapters in edited books (1):

• Andrzej Mizera, Elena Czeizler, Ion Petre, Computational methods for quantitative submodel comparison. In: Evgeny Katz (Ed.), Biomolecular Information Processing. From Logic Systems to Smart Sensors and Actuators, 323–346, Wiley-VCH Verlagsgesellschaft, 2012.

Ph.D. thesis (1):

• Elena Czeizler, Intricacies of Word Equations. TUCS Dissertations 88. Turku Centre for Computer Science, 2007.

Technical reports (7):

• Elena Czeizler, Eugen Czeizler, Bogdan Iancu, Ion Petre, Quantitative Model Refinement as a Solution to the Combinatorial Size Explosion of Biomodels. TUCS Technical Reports 1015, Turku Centre for Computer Science, 2011.
• Elena Czeizler, Andrzej Mizera, Ion Petre, A Boolean Approach for Disentangling the Numerical Contribution of Modules to the System-Level Behavior of a Biomodel. TUCS Technical Reports 997, Turku Centre for Computer Science, 2011.
• Andrzej Mizera, Elena Czeizler, Ion Petre, Methods for Biochemical Model Decomposition and Quantitative Submodel Comparison. TUCS Technical Reports 1005, Turku Centre for Computer Science, 2011.
• Eugen Czeizler, Andrzej Mizera, Elena Czeizler, Ralph-johan Back, John Eriksson, Ion Petre, Quantitative Analysis of the Self-Assembly Strategies of Intermediate Filaments From Tetrameric Vimentin. TUCS Technical Reports 963, Turku Centre for Computer Science, 2009.
• Elena Czeizler, Stepan Holub, Juhani Karhumäki, Markku Laine, Intricacies of Simple Word Equations: An Example. TUCS Technical Reports 804, Turku Centre for Computer Science, 2007.
• Elena Czeizler, Juhani Karhumäki, On Different Constrains on Three and Four Words. TUCS Technical Reports 787, Turku Centre for Computer Science, 2006.
• Elena Czeizler, Eugen Czeizler, On the Power of Parallel Communicating Watson-Crick Automata Systems. TUCS Technical Reports 722, Turku Centre for Computer Science, 2005.