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BioInfer Relationship Annotation Manual

Filip Ginter, Sampo Pyysalo, Jari Björne, Juho Heimonen, Tapio Salakoski, BioInfer Relationship Annotation Manual. TUCS Technical Reports 806, Turku Centre for Computer Science, 2007.

Abstract:

This annotation manual supplements the paper BioInfer: a corpus for information extraction in the biomedical domain (Pyysalo, Ginter, Heimonen, Björne, Boberg, Järvinen, Salakoski. BMC Bioinformatics, 8(50), 2007) that describes the BioInfer corpus. The manual details the rules guiding the annotation of entities and their relationships, extending the more general description given in the paper. The rules are given with examples clarifying their use and organized according to topic. This manual can serve as a reference for the users of the corpus as well as for producing annotation following the BioInfer scheme.

Files:

Full publication in PDF-format

BibTeX entry:

@TECHREPORT{tGiPyBjHeSa07a,
  title = {BioInfer Relationship Annotation Manual},
  author = {Ginter, Filip and Pyysalo, Sampo and Björne, Jari and Heimonen, Juho and Salakoski, Tapio},
  number = {806},
  series = {TUCS Technical Reports},
  publisher = {Turku Centre for Computer Science},
  year = {2007},
  keywords = {corpus annotation, protein-protein interactions, BioInfer},
  ISBN = {978-952-12-1850-7},
}

Belongs to TUCS Research Unit(s): Turku BioNLP Group

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