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Department: Any ÅAU / Department of Information Technologies UTU / Department of Information Technology UTU / Department of Mathematics and Statistics UTU / Turku School of Economics, Institute of Information Systems Sciences

Research Unit: Any Algorithmics and Computational Intelligence Group (ACI) Biomathematics Research Unit (BIOMATH) Communication Systems (ComSys) Computational Biomodeling Laboratory (Combio Lab) Data Mining and Knowledge Management Laboratory Distributed Systems Laboratory (DS Lab) Embedded Computer and Electronic Systems (ECES) Embedded Systems Laboratory (ESLAB) FUNDIM, Fundamentals of Computing and Discrete Mathematics Institute for Advanced Management Systems Research (IAMSR) Learning and Reasoning Lab Software Construction Laboratorium Software Development Laboratory (SwDev) Software Engineering Laboratory (SE Lab) Turku BioNLP Group Turku Optimization Group (TOpGroup) UTU Information Systems Science (ISS)

Publication type: Any Monographs Edited books Edited special issues of journals Edited proceedings Articles in journals Articles in proceedings Chapters in edited books Ph.D. thesis Lic. thesis Technical reports

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Edited proceedings (1):

• Jukka Heikkinen, Salomon Janhunen, Timo Kiviniemi, Susan Leerink, Markus Nora, Francisco Ogando, Mats Aspnäs, Tuomas Korpilo, Artur Signell, Jan Westerholm, V Bulanin, Evgeniy Gusakov (Eds.), Full f Gyrokinetic Simulation of Tokamak Plasma Turbulence Using ELMFIRE , Proceedings of 22nd IAEA Fusion Energy Conference , 2008.

Articles in journals (18):

• Ville Mäkinen, Tapani Sarjakoski, Juha Oksanen, Jan Westerholm, A Multi-GPU Program for Uncertainty-Aware Drainage Basin Delineation - Scalability Benchmarking with Country-Wide Data Sets. IEEE Geoscience and Remote Sensing Magazine 4(3), 59–68, 2016.
• Keijo Mattila, Tuomas Puurtinen, Jari Hyväluoma, Rodrigo Surmas, Markko Myllys, Tuomas Turpeinen, Fredrik Robertsén, Jan Westerholm, Jussi Timonen, A Prospect for Computing in Porous Materials Research: Very Large Fluid Flow Simulations. Journal of Computational Science 12, 62 – 76, 2016.
• Fredrik Robertsén, Jan Westerholm, Keijo Mattila, Designing a Graphics Processing Unit Accelerated Petaflop Capable Lattice Boltzmann Solver: Read Aligned Data Layouts and Asynchronous Communication. The International Journal of High Performance Computing Applications , 1094342016658109, 2016.
• Johan Sten, Harri Lilja, Jari Hyväluoma, Jan Westerholm, Mats Aspnäs, Parallel Flow Accumulation Algorithms for Graphical Processing Units with Application to RUSLE Mode. Computers & Geosciences 89, 88–95, 2016.
• Johan Sten, Harri Lilja, Jari Hyväluoma, Jan Westerholm, Mats Aspnäs, Parallel Flow Accumulation Algorithms for Graphical Processing Units with Application to RUSLE Model. Computers & Geosciences 89, 88–95, 2016.
• Eelis Takala, Evren Yurtesen, Jan Westerholm, Juha Ruokolainen, Tommi Peussa, Using Reduced Support to Enhance Parallel Strong Scalability in 3D Finite-Element Magnetic Vector Potential Formulations with Circuit Equations. Electromagnetics 36(6), 400–408, 2016.
• Eelis Takala, Evren Yurtesen, Jan Westerholm, Juha Ruokolainen, Peter Råback, Parallel Simulations of Inductive Components with Elmer Finite-Element Software in Cluster Environments. Electromagnetics 36(3), 167–185, 2016.
• Jani Sainio, Jan Westerholm, Juha Oksanen, Generating Heat Maps of Popular Routes Online from Massive Mobile Sports Tracking Application Data in Milliseconds While Respecting Privacy. ISPRS International Journal of Geo-Information 4(4), 1813–1826, 2015.
• David Eränen, Juha Oksanen, Jan Westerholm, Tapani Sarjakoski, A Full Graphics Processing Unit Implementation of Uncertainty-Aware Drainage Basin Delineation. Computers and Geosciences 73, 48 – 60, 2014.
• Mats Aspnäs, Kimmo Mattila, Kristoffer Osowski, Jan Westerholm, Code Optimization of the Subroutine to Remove Near Identical Matches in the Sequence Database Homology Search Tool PSI-BLAST. Journal of Computational Biology 17(6), 819–823, 2010.
• Artur Signell, Johan Schöring, Mats Aspnäs, Jan Westerholm, Parallelization, Spatial Decomposition and Load Balancing of a Single Tree Level Forest Dynamics Simulator. Mathematical and Computational Forestry and Natural Resource Sciences 2(1), 30–40, 2010.
• Ville Timonen, Jan Westerholm, Scalable Height Field Self-Shadowing. Computer Graphics Forum 29(2), 723–731, 2010.
• Artur Signell, Francisco Ogando, Mats Aspnäs, Jan Westerholm, Scalable plasma simulation with ELMFIRE using efficient data structures for process communication. . Computer Physics Communications 179(5), 330–338, 2008.
• Keijo Mattila, Jari Hyväluoma, Tuomo Rossi, Mats Aspnäs, Jan Westerholm, An Efficient Swap Algorithm for the Lattice Boltzmann Method. Computer Physics Communications 176(3), 200–210, 2007.
• Thomas Byholm, Martti Toivakka, Jan Westerholm, The Application of Morphological Algorithms on 3-Dimensional Porous Structures for Identifying Pores and Gathering Statistical Data. WSEAS Transactions on Information Science and Applications 3(12), 2374-2380, 2006.
• Jukka Arvo, Jan Westerholm, Hardware-Accelerated Soft Shadows Using Penumbra Quads. Journal of WSCG 12(1), 11-18, 2004.
• Arsi Rosengren, Jussi Salmi, Tero Aittokallio, Jan Westerholm, Riitta Lahesmaa, Tuula Nyman, Olli Nevalainen, Comparison of PDQuest and Progenesis Software Packages in the Analysis of Two-Dimensional Electrophoresis Gels. PROTEOMICS 3(10), 1936–1946, 2003.
• Jussi Salmi, Tero Aittokallio, Jan Westerholm, Matias Griese, Arsi Rosengren, Tuula Nyman, Riitta Lahesmaa, Olli Nevalainen, Hierarchical Grid Transformation for Image Warping in the Analysis of Two-Dimensional Electrophoresis Gels. Proteomics 2(11), 1504–1515, 2002.

Articles in proceedings (12):

• Johan Ersfolk, Pontus Boström, Ville Timonen, Jan Westerholm, Jonatan Wiik, Otso Karhu, Matti Linjama, Marina Waldén, Optimal Digital Valve Control Using Embedded GPU. In: Janne Uusi-Heikkilä, Matti Linjama (Eds.), Preceedings of the Eight Workshop on Digital Fluid Power, 239–250, Tampere University of Technology, 2016.
• Jesús Carabaño, Tapani Sarjakoski, Jan Westerholm, Efficient Implementation of a Fast Viewshed Algorithm on SIMD Architectures. In: Masoud Daneshtalab, Marco Aldinucci, Ville Leppänen, Johan Lilius, Mats Brorsson (Eds.), 23rd Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP), 199 – 202, IEEE, 2015.
• Fredrik Robertsén, Jan Westerholm, Keijo Mattila, Lattice Boltzmann Simulations at Petascale on Multi-GPU Systems with Asynchronous Data Transfer and Strictly Enforced Memory Read Alignment. In: Masoud Daneshtalab, Marco Aldinucci, Ville Leppänen, Johan Lilius, Mats Brorsson (Eds.), 23rd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing, {PDP} 2015, Turku, Finland, March 4-6, 2015, 604–609, IEEE, 2015.
• Ville Mäkinen, Tapani Sarjakoski, Juha Oksanen, Jan Westerholm, Scalable Uncertainty-Aware Drainage Basin Delineation Program Using Digital Elevation Models in Multi-Node GPU Environments. In: Proceedings of the 2014 conference on Big Data from Space, 59–68, IEEE, 2014.
• Adrian Jackson, Fiona Reid, Stephen Booth, Joachim Hein, Jan Westerholm, Mats Aspnäs, Miquel Català, Alejandro Soba, Parallel Optimisation Strategies for Fusion Codes. In: Yiannis Cotronis, Marco Danuletto, George Papadopoullos (Eds.), Proceedings of the 19th International Euromicro Conference on Parallel, Distributed and Network-Based Computing, 357–364, IEEE Computer Society, 2011.
• Evren Yurtesen, Matti Ropo, Mats Aspnäs, Jan Westerholm, SSE Vectorized and GPU Implementations of Arakawa's Formula for Numerical Integration of Equations of Fluid Motion. In: Yiannis Danuletto Marco Papadopoullos George Cotronis (Ed.), Euromicro International Conference on Parallel, Distributed and Network-Based Computing, 341–348, IEEE Computer Society, 2011.
• Adrian Jackson, Adam Carter, Joachim Hein, Jan Westerholm, Mats Aspnäs, Matti Ropo, Alejandro Soba, EUFORIA HPC: Massive Parallelization for Fusion Community. In: Marco Bourgeois Julien Gross Tom Danelutto (Ed.), Proceedings of the 18th Euromicro Conference on Parallel, Distributed and Network-Based Processing, 489–497, IEEE Computer Society, 2010.
• Artur Signell, Johan Schöring, Mats Aspnäs, Jan Westerholm, An Individual Tree Simulator for Assessment of Forest Management Methods. In: Cray User Group 2008 Proceedings (CD-ROM), 2008.
• Mats Aspnäs, Artur Signell, Jan Westerholm, Efficient Assembly of Sparse Matrices Using Hashing. In: Kågström Bo, Erik Elmroth, Jack Dongarra, Jerzy Wasniewski (Eds.), Proceedings of PARA 2006, Applied Parallel Computing, State of the Art in Scientific Computing, Lecture Notes in Computer Science, 900–907, Springer-Verlag, 2007.
• Thomas Byholm, Parvez Alam, Jan Westerholm, Martti Toivakka, The Use Of Morphological Algorithms And Finite Difference Methods on 3-Dimensional Paper Coating Structures For Identifying Pores, Gathering Statistical Data And Physical Constants. In: 13th International Coating Science and Technology proceedings, 2006, 2006.
• Thomas Byholm, Jan Westerholm, Martti Toivakka, The Use of Morphological Algorithms on 3-Dimensional Paper Coating Structures for Identifying Pores, Gathering Statistical Data and Physical Constants. In: The 6th WSEAS International Conference on Simulation, Modelling and Optimization (SMO'06), 2006.
• Ralph-Johan Back, Cristina Cerschi Seceleanu, Jan Westerholm, Symbolic Simulation of Hybrid Systems. In: Proceedings of the 9th Asia-Pacific Software Engineering Conference (APSEC 2002), 147-155, IEEE Computer Society, 2002.

Technical reports (5):

• Jesús Carabaño, Jan Westerholm, A Compiler and Runtime Approach to Parallel Spatial Modeling. TUCS Technical Reports 1203, 2019.
• Fredrik Robertsén, Keijo Mattila, Jan Westerholm, Lattice Boltzmann Method on GPUs: A Comparison Between OpenACC and CUDA. TUCS Technical Reports 1191, TUCS, 2018.
• Ville Timonen, Jan Westerholm, Scalable Height Field Self-Shadowing. TUCS Technical Reports 957, Turku Centre for Computer Science, 2009.
• Kristoffer Osowski, Jan Westerholm, Mats Aspnäs, Two Cases of Data Overflow in the Protein Sequencing Program BLASTPGP. TUCS Technical Reports 813, Turku Centre for Computer Science, 2007.
• Ralph-Johan Back, Cristina Cerschi Seceleanu, Jan Westerholm, Symbolic Simulation of Hybrid Systems. TUCS Technical Reports 503, Turku Centre for Computer Science, 2003.